Луис Кинтана-Мурси – Люди. По следам наших миграций, приспособлений и поисков компромиссов (страница 54)

Fumagalli, M., Sironi, M., Pozzoli, U., Ferrer-Admetlla, A., Pattini, L., Nielsen, R., «Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution», PLoS Genet., 7, 11 (2011), e1002355.

Galvani, A. P., Novembre, J., «The Evolutionary History of the Ccr5-Delta32 Hiv— Resistance Mutation», Microbes Infect., 7, 2 (2005), p. 302–309.

Galvani, A. P., Slatkin, M., «Evaluating Plague and Smallpox as Historical Selective Pressures for the Ccr5-Delta 32 Hiv-Resistance Allele», Proc. Natl Acad. Sci. USA, 100, 25 (2003), p. 15276–15279.

Gomez, F., Hirbo, J., Tishkoff, S. A., «Genetic Variation and Adaptation in Africa: Implications for Human Evolution and Disease», Cold Spring Harb. Perspect. Biol., 6, 7 (2014), a008524.

Gouy, A., Daub, J. T., Excoffier, L., «Detecting Gene Subnetworks under Selection in Biological Pathways», Nucleic Acids Res., 45, 16 (2017), e149.

Gouy, A., Excoffier, L., «Polygenic Patterns of Adaptive Introgression in Modern Humans Are Mainly Shaped by Response to Pathogens», Mol. Biol. Evol., 37, 5 (2020), p. 1420–1433.

Gunalan, K., Lo, E., Hostetler, J. B., Yewhalaw, D., Mu, J., Neafsey, D. E., Yan, G., Miller, L. H., «Role of Plasmodium Vivax Duffy-Binding Protein 1 in Invasion of Duffy-Null Africans», Proc. Natl Acad. Sci. USA, 113, 22 (2016), p. 6271–6276.

Hahn, M. W., Demuth, J. P., Han, S. G., «Accelerated Rate of Gene Gain and Loss in Primates», Genetics, 177, 3 (2007), p. 1941–1949.

Haldane, J. B. S., «Disease and Evolution», Ric. Sci., 19 (Suppl. A) (1949), p. 68–76.

Hamblin, M. T., Thompson, E. E., Di Rienzo, A., «Complex Signatures of Natural Selection at the Duffy Blood Group Locus», Am. J. Hum. Genet., 70, 2 (2002), p. 369–383.

Hill, A. V., «Aspects of Genetic Susceptibility to Human Infectious Diseases», Annu. Rev. Genet., 40 (2006), p. 469–486.

Hodgson, J. A., Pickrell, J. K., Pearson, L. N., Quillen, E. E., Prista, A., Rocha, J., Soodyall, H., Shriver, M. D., Perry, G. H., «Natural Selection for the Duffy-Null Allele in the Recently Admixed People of Madagascar», Proc. Biol. Sci., 281, 1789 (2014), 20140930.

Hutagalung, R., Wilairatana, P., Looareesuwan, S., Brittenham, G. M., Aikawa, M., Gordeuk, V. R., «Influence of Hemoglobin E Trait on the Severity of Falciparum Malaria», J. Infect. Dis., 179, 1 (1999), p. 283–286.

Idaghdour, Y., Quinlan, J., Goulet, J. P., Berghout, J., Gbeha, E., Bruat, V., de Malliard, T., et al., «Evidence for Additive and Interaction Effects of Host Genotype and Infection in Malaria», Proc. Natl Acad. Sci. USA, 109, 42 (2012), p. 16786–16793.

Jallow, M., Teo, Y. Y., Small, K. S., Rockett, K. A., Deloukas, P., Clark, T. G., Kivinen, K., et al., «Genome-Wide and Fine-Resolution Association Analysis of Malaria in West Africa», Nat. Genet., 41, 6 (2009), p. 657–665.

Jin, W., Xu, S., Wang, H., Yu, Y., Shen, Y., Wu, B., Jin, L., «Genome-Wide Detection of Natural Selection in African Americans Pre- and Post-Admixture», Genome Res., 22, 3 (2012), p. 519–527.

Joy, D. A., Feng, X., Mu, J., Furuya, T., Chotivanich, K., Krettli, A. U., Ho, M., et al., «Early Origin and Recent Expansion of Plasmodium Falciparum», Science, 300, 5617 (2003), p. 318–321.

Karlsson, E. K., Harris, J. B., Tabrizi, S., Rahman, A., Shlyakhter, I., Patterson, N., O’Dushlaine, C., et al., «Natural Selection in a Bangladeshi Population from the Cholera-Endemic Ganges River Delta», Sci. Transl Med., 5, 192 (2013), 192ra86.

Karlsson, E. K., Kwiatkowski, D. P., Sabeti, P. C., «Natural Selection and Infectious Disease in Human Populations», Nat. Rev. Genet., 15, 6 (2014), p. 379–393.

Keele, B. F., Jones, J. H., Terio, K. A., Estes, J. D., Rudicell, R. S., Wilson, M. L., Li, Y., et al., «Increased Mortality and Aids-Like Immunopathology in Wild Chimpanzees Infected with Sivcpz», Nature, 460, 7254 (2009), p. 515–519.

Kerner, G., Laval, G., Patin, E., Boisson-Dupuis, S., Abel, L., Casanova, J. L., Quintana-Murci, L., «Human Ancient DNA Analyses Reveal the High Burden of Tuberculosis in Europeans over the Last 2,000 Years», Am. J. Hum. Genet., 108, 3 (2021), p. 517–524.

Kerner, G., Patin, E., Quintana-Murci, L., «New Insights into Human Immunity from Ancient Genomics», Curr. Opin. Immunol., 72 (2021), p. 116–125.

Kerner, G., Ramirez-Alejo, N., Seeleuthner, Y., Yang, R., Ogishi, M., Cobat, A., Patin, E., et al., «Homozygosity for Tyk2 P1104a Underlies Tuberculosis in About 1 % of Patients in a Cohort of European Ancestry», Proc. Natl Acad. Sci. USA, 116, 21 (2019), p. 10430–10434.

Klein, J., Satta, Y., O’HUigin, C., Takahata, N., «The Molecular Descent of the Major Histocompatibility Complex», Annu. Rev. Immunol., 11 (1993), p. 269–295.

Koda, Y., Tachida, H., Pang, H., Liu, Y., Soejima, M., Ghaderi, A. A., Takenaka, O., Kimura, H., «Contrasting Patterns of Polymorphisms at the Abo-Secretor Gene (Fut2) and Plasma Alpha(1,3)Fucosyltransferase Gene (Fut6) in Human Populations», Genetics, 158, 2 (2001), p. 747–756.

Kulkarni, S., Martin, M. P., Carrington, M., «The Yin and Yang of Hla and Kir in Human Disease», Semin. Immunol., 20, 6 (2008), p. 343–352.

Kwiatkowski, D. P., «How Malaria Has Affected the Human Genome and What Human Genetics Can Teach Us About Malaria», Am. J. Hum. Genet., 77, 2 (2005), p. 171–192.

Laayouni, H., Oosting, M., Luisi, P., Ioana, M., Alonso, S., Ricano-Ponce, I., Trynka, G., et al., «Convergent Evolution in European and Rroma Populations Reveals Pressure Exerted by Plague on Toll-Like Receptors», Proc. Natl Acad. Sci. USA, 111, 7 (2014), p. 2668–2673.

Lalani, A. S., Masters, J., Zeng, W., Barrett, J., Pannu, R., Everett, H., Arendt, C. W., McFadden, G., «Use of Chemokine Receptors by Poxviruses», Science, 286, 5446 (1999), p. 1968–1971.

Laso-Jadart, R., Harmant, C., Quach, H., Zidane, N., Tyler-Smith, C., Mehdi, Q., Ayub, Q., Quintana-Murci, L., Patin, E., «The Genetic Legacy of the Indian Ocean Slave Trade: Recent Admixture and Post-Admixture Selection in the Makranis of Pakistan», Am. J. Hum. Genet., 101, 6 (2017), p. 977–984.

Laval, G., Peyregne, S., Zidane, N., Harmant, C., Renaud, F., Patin, E., Prugnolle, F., Quintana-Murci, L., «Recent Adaptive Acquisition by African Rainforest Hunter-Gatherers of the Late Pleistocene Sickle-Cell Mutation Suggests Past Differences in Malaria Exposure», Am. J. Hum. Genet., 104, 3 (2019), p. 553–561.

Leffler, E. M., Gao, Z., Pfeifer, S., Segurel, L., Auton, A., Venn, O., Bowden, R., et al., «Multiple Instances of Ancient Balancing Selection Shared between Humans and Chimpanzees», Science, 339, 6127 (2013), p. 1578–1582.

Libert, F., Cochaux, P., Beckman, G., Samson, M., Aksenova, M., Cao, A., Czeizel, A., et al., «The Deltaccr5 Mutation Conferring Protection against Hiv-1 in Caucasian Populations Has a Single and Recent Origin in Northeastern Europe», Hum. Mol. Genet., 7, 3 (1998), p. 399–406.

Lindesmith, L., Moe, C., Marionneau, S., Ruvoen, N., Jiang, X., Lindblad, L., Stewart, P., LePendu, J., Baric, R., «Human Susceptibility and Resistance to Norwalk Virus Infection», Nat. Med., 9, 5 (2003), p. 548–553.

Lindo, J., Huerta-Sanchez, E., Nakagome, S., Rasmussen, M., Petzelt, B., Mitchell, J., Cybulski, J. S., et al., «A Time Transect of Exomes from a Native American Population before and after European Contact», Nat. Commun., 7 (2016), p. 13175.

Livingstone, F. B., «The Duffy Blood Groups, Vivax Malaria, and Malaria Selection in Human Populations: A Review», Hum. Biol., 56, 3 (1984), p. 413–425.

Lopez, M., Choin, J., Sikora, M., Siddle, K., Harmant, C., Costa, H. A., Silvert, M., et al., «Genomic Evidence for Local Adaptation of Hunter-Gatherers to the African Rainforest», Curr. Biol., 29, 17 (2019), p. 2926–2935, e4.

Louicharoen, C., Patin, E., Paul, R., Nuchprayoon, I., Witoonpanich, B., Peerapittayamongkol, C., Casademont, I., et al., «Positively Selected G6pd-Mahidol Mutation Reduces Plasmodium Vivax Density in Southeast Asians», Science, 326, 5959 (2009), p. 1546–1549.

MacArthur, D. G., Balasubramanian, S., Frankish, A., Huang, N., Morris, J., Walter, K., Jostins, L., et al., «A Systematic Survey of Loss-of-Function Variants in Human Protein-Coding Genes», Science, 335, 6070 (2012), p. 823–828.

Manry, J., Laval, G., Patin, E., Fornarino, S., Itan, Y., Fumagalli, M., Sironi, M., et al., «Evolutionary Genetic Dissection of Human Interferons», J. Exp. Med., 208, 13 (2011), p. 2747–2759.

Martin, M. P., Dean, M., Smith, M. W., Winkler, C., Gerrard, B., Michael, N. L., Lee, B., et al., «Genetic Acceleration of Aids Progression by a Promoter Variant of Ccr5», Science, 282, 5395 (1998), p. 1907–1911.

Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., et al., «Genome-Wide Patterns of Selection in 230 Ancient Eurasians», Nature, 528, 7583 (2015), p. 499–503.

McManus, K. F., Taravella, A. M., Henn, B. M., Bustamante, C. D., Sikora, M., Cornejo, O. E., «Population Genetic Analysis of the Darc Locus (Duffy) Reveals Adaptation from Standing Variation Associated with Malaria Resistance in Humans», PLoS Genet., 13, 3 (2017), e1006560.