Эд Йонг – Вселенная внутри нас. Как микробы обогащают наш взгляд на жизнь (страница 70)

Paine, R.T., Tegner, M.J., Johnson, E.A. (1998) ‘Compounded perturbations yield ecological surprises’, Ecosystems 1, 535–545.

Pais, R., Lohs, C., Wu, Y., et al. (2008) ‘The obligate mutualist Wigglesworthia glossinidiainfluences reproduction, digestion, and immunity processes of its host, the tsetse fly’, Appl. Environ. Microbiol. 74, 5965–5974.

Pannebakker, B.A., Loppin, B., Elemans, C.P., et al. (2007) ‘Parasitic inhibition of cell death facilitates symbiosis’, Proc. Natl. Acad. Sci. 104, 213–215.

Payne, A.S. (1970) The Cleere Observer. A Biography of Antoni Van Leeuwenhoek(London: Macmillan).

Petrof, E.O., Khoruts, A. (2014) ‘From stool transplants to next-generation microbiota therapeutics’, Gastroenterology 146, 1573–1582.

Petrof, E., Gloor, G., Vanner, S., et al. (2013) ‘Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut’, Microbiome 2013, 3.

Petschow, B., Doré, J., Hibberd, P., et al. (2013) ‘Probiotics, prebiotics, and the host microbiome: the science of translation’, Ann. N. Y. Acad. Sci. 1306, 1–17.

Pickard, J.M., Maurice, C.F., Kinnebrew, M.A., et al. (2014) ‘Rapid fucosylation of intestinal epithelium sustains host – commensal symbiosis in sickness’, Nature 514, 638–641.

Pinto-Sanchez, M.I., Hall, G.B., Ghajar, K., et al. (2017) ‘Probiotic Bifidobacterium longum NCC3001 reduces depression scores and alters brain activity: a pilot study in patients with irritable bowel syndrome’, Gastroenterology.

Poulsen, M., Hu, H., Li, C., et al. (2014) ‘Complementary symbiont contributions to plant decomposition in a fungus-farming termite’, Proc. Natl. Acad. Sci. 111, 14500–14505.

Qian, J., Hospodsky, D., Yamamoto, N., et al. (2012) ‘Size-resolved emission rates of airborne bacteria and fungi in an occupied classroom: size-resolved bioaerosol emission rates’, Indoor Air 22, 339–351.

Quammen, D. (1997) The Song of the Dodo: Island Biogeography in an Age of Extinction(New York: Scribner).

Rawls, J.F., Samuel, B.S., Gordon, J.I. (2004) ‘Gnotobiotic zebrafish reveal evolutionarily conserved responses to the gut microbiota’, Proc. Natl. Acad. Sci. 101, 4596–4601.

Rawls, J.F., Mahowald, M.A., Ley, R.E., Gordon, J.I. (2006) ‘Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection’, Cell127, 423–433.

Redford, K.H., Segre, J.A., Salafsky, N., et al. (2012) ‘Conservation and the Microbiome: Editorial. Conserv. Biol. 26, 195–197.

Reid, G. (2011) ‘Opinion paper: Quo vadis – EFSA?’, Benef. Microbes 2, 177–181.

Relman, D.A. (2008), ‘ “Til death do us part”: coming to terms with symbiotic relationships’, Foreword. Nat. Rev. Microbiol. 6, 721–724.

Relman, D.A. (2012) ‘The human microbiome: ecosystem resilience and health’, Nutr. Rev. 70, S2–S9.

Ridaura, V.K., Faith, J.J., Rey, F.E., et al. (2013) ‘Gut microbiota from twins discordant for obesity modulate metabolism in mice’, Science 341, 1241214.

Rigaud, T., Juchault, P. (1992). Heredity – Abstract of article: ‘Genetic control of the vertical transmission of a cytoplasmic sex factor in Armadillidium vulgare Latr. (Crustacea, Oniscidea)’, Heredity 68, 47–52.

Riley, D.R., Sieber, K.B., Robinson, K.M., et al. (2013) ‘Bacteria – human somatic cell lateral gene transfer is enriched in cancer samples’, PLoS Comput. Biol. 9, e1003107.

Roberts, C.S. (1990) ‘William Beaumont, the man and the opportunity’, in Clinical Methods: The History, Physical, and Laboratory Examinations, H. K. Walker, W. D. Hall, J. W. Hurst, eds (Boston: Butterworths).

Roberts, S.C., Gosling, L.M., Spector, T.D., et al. (2005) ‘Body Odor Similarity in Noncohabiting Twins’, Chem. Senses 30, 651–656.

Rogier, E.W., Frantz, A.L., Bruno, M.E., et al. (2014) ‘Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression’, Proc. Natl. Acad. Sci. 111, 3074–3079.

Rohwer, F., Youle, M. (2010) Coral Reefs in the Microbial Seas (United States: Plaid Press). Rook, G.A.W., Lowry, C.A., Raison, C.L. (2013) ‘Microbial ‘Old Friends’, immunoregulation and stress resilience’, Evol. Med. Public Health 2013, 46–64.

Rosebury, T. (1962) Microorganisms Indigenous to Man (New York: McGraw-Hill).

Rosebury, T. (1969) Life on Man (New York: Viking Press).

Rosenberg, E., Sharon, G., Zilber-Rosenberg, I. (2009) ‘The hologenome theory of evolution contains Lamarckian aspects within a Darwinian framework’, Environ. Microbiol. 11, 2959–2962.

Rosner, J. (2014) ‘Ten times more microbial cells than body cells in humans?’, Microbe 9, 47.

Round, J.L., Mazmanian, S.K. (2009) ‘The gut microbiota shapes intestinal immune responses during health and disease’, Nat. Rev. Immunol. 9, 313–323.

Round, J.L., Mazmanian, S.K. (2010) ‘Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota’, Proc. Natl. Acad. Sci. 107, 12204–12209.

Russell, C.W., Bouvaine, S., Newell, P.D., Douglas, A.E. (2013a) ‘Shared metabolic pathways in a coevolved insect – bacterial symbiosis’, Appl. Environ. Microbiol. 79, 6117–6123.

Russell, J.A., Funaro, C.F., Giraldo, Y.M., et al. (2012) ‘A veritable menagerie of heritable bacteria from ants, butterflies, and beyond: broad molecular surveys and a systematic review’, PLoS ONE 7, e51027.

Russell, J.A., Weldon, S., Smith, A.H., et al. (2013b) ‘Uncovering symbiont-driven genetic diversity across North American pea aphids’, Mol. Ecol. 22, 2045–2059.

Rutherford, A. (2013). Creation: The Origin of Life / The Future of Life (London: Penguin).

Sachs, J.L., Skophammer, R.G., Regus, J.U. (2011) ‘Evolutionary transitions in bacterial symbiosis’, Proc. Natl. Acad. Sci. 108, 10800–10807.

Sacks, O. (23 April 2015) ‘A General Feeling of Disorder.’ N. Y. Rev. Books.

Saeidi, N., Wong, C.K., Lo, T-M., et al. (2011) ‘Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen’, Mol. Syst. Biol. 7, 521.

Sagan, L. (1967) ‘On the origin of mitosing cells’, J. Theor. Biol. 14, 255–274.

Salter, S.J., Cox, M.J., Turek, E.M., et al. (2014) ‘Reagent and laboratory contamination can critically impact sequence-based microbiome analyses’, BMC Biol. 12, 87.

Salzberg, S.L. (2001) ‘Microbial genes in the human genome: lateral transfer or gene loss?’, Science 292, 1903–1906.

Salzberg, S.L., Hotopp, J.C., Delcher, A.L., et al. (2005) ‘Serendipitous discovery of Wolbachia genomes in multiple Drosophila species’, Genome Biol. 6, R23.

Sanders, J.G., Beichman, A.C., Roman, J., et al. (2015) ‘Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores’, Nat. Commun. 6, 8285.

Sangodeyi, F.I. (2014) ‘The Making of the Microbial Body, 1900s–2012.’ Harvard University.

Sapp, J. (1994) Evolution by Association: A History of Symbiosis (New York: Oxford University Press).

Sapp, J. (2002) ‘Paul Buchner (1886–1978) and hereditary symbiosis in insects’, Int. Microbiol. 5, 145–150.

Sapp, J. (2009) The New Foundations of Evolution: On the Tree of Life (Oxford and New York: Oxford University Press).

Savage, D.C. (2001) ‘Microbial biota of the human intestine: a tribute to some pioneering scientists’, Curr. Issues Intest. Microbiol. 2, 1–15.

Schilthuizen, M.O., Stouthamer, R. (1997) Horizontal transmission of parthenogenesis-inducing microbes in Trichogramma wasps’, Proc. R. Soc. Lond. B Biol. Sci. 264, 361–366.

Schluter, J., Foster, K.R. (2012) ‘The evolution of mutualism in gut microbiota via host epithelial selection’, PLoS Biol. 10, e1001424.

Schmidt, C. (2013) ‘The startup bugs’, Nat. Biotechnol. 31, 279–281.

Schmidt, T.M., DeLong, E.F., Pace, N.R. (1991) ‘Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing’, J. Bacteriol. 173, 4371–4378.

Schnorr, S.L., Candela, M., Rampelli, S., et al. (2014) ‘Gut microbiome of the Hadza hunter-gatherers’, Nat. Commun. 5, 3654.

Schubert, A.M., Sinani, H., Schloss, P.D. (2015) ‘Antibiotic-induced alterations of the murine gut microbiota and subsequent effects on colonization resistance against Clostridium difficile’, mBio 6, e00974–15.

Sela, D.A., Mills, D.A. (2014) ‘The marriage of nutrigenomics with the microbiome: the case of infant-associated bifidobacteria and milk’, Am. J. Clin. Nutr. 99, 697S–703S.

Sela, D.A., Chapman, J., Adeuya, A., et al. (2008) ‘The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome’, Proc. Natl. Acad. Sci. 105, 18964–18969.

Selosse, M-A., Bessis, A., Pozo, M.J. (2014) ‘Microbial priming of plant and animal immunity: symbionts as developmental signals’, Trends Microbiol. 22, 607–613.

Shanahan, F. (2010) ‘Probiotics in perspective’, Gastroenterology 139, 1808–1812.

Shanahan, F. (2012) ‘The microbiota in inflammatory bowel disease: friend, bystander, and sometime-villain’, Nutr. Rev. 70, S31–S37.

Shanahan, F., Quigley, E.M.M. (2014) ‘Manipulation of the microbiota for treatment of IBS and IBD – challenges and controversies’, Gastroenterology 146, 1554–1563.

Sharma, R., Jayoussi, G.A., Tyrer, H.E., et al. (2016) ‘Minocycline as a re-purposed anti-Wolbachia macrofilaricide: superiority compared with doxycycline regimens in a murine infection model of human lymphatic filariasis’, Sci. Rep. 6.